[artix-build-failures] [galaxy] Failure: python-h5py-3.6.0-3

jenkins at artixlinux.org jenkins at artixlinux.org
Mon Mar 21 09:57:16 CET 2022


   Build: x86_64/community

   Name: python-h5py-3.6.0-3

   author: qontinuum

   email: qontinuum at artixlinux.org

   [1]https://orion.artixlinux.org/job/packagesPython/job/python-h5py/job/
   master/2/

References

   1. https://orion.artixlinux.org/job/packagesPython/job/python-h5py/job/master/2/
-------------- next part --------------
Started by user qontinuum
Looking up repository packagesPython/python-h5py
Querying the current revision of branch master...
Current revision of branch master is e8a7082bdc625d79bc41d5d45bfce2ba2ed1f370
Obtained Jenkinsfile from e8a7082bdc625d79bc41d5d45bfce2ba2ed1f370
Loading library artix-ci at master
Attempting to resolve master from remote references...
 > git --version # timeout=10
 > git --version # 'git version 2.32.0'
 > git ls-remote -- https://gitea.artixlinux.org/artix/pipeline-libs.git # timeout=10
Found match: refs/heads/master revision d9ed61b32f86824fd57e33b28d07d6ad7820bf63
Selected Git installation does not exist. Using Default
The recommended git tool is: NONE
Warning: CredentialId "jenkins-gotea-token" could not be found.
 > git rev-parse --resolve-git-dir /var/lib/jenkins/workspace/ackagesPython_python-h5py_master at libs/d1b6e538991d6cf27c1f72e8cf4d6e290b22a9c93094b0e97e3a05b8d58db898/.git # timeout=10
Fetching changes from the remote Git repository
 > git config remote.origin.url https://gitea.artixlinux.org/artix/pipeline-libs.git # timeout=10
Fetching without tags
Fetching upstream changes from https://gitea.artixlinux.org/artix/pipeline-libs.git
 > git --version # timeout=10
 > git --version # 'git version 2.32.0'
 > git fetch --no-tags --force --progress -- https://gitea.artixlinux.org/artix/pipeline-libs.git +refs/heads/master:refs/remotes/origin/master # timeout=10
Checking out Revision d9ed61b32f86824fd57e33b28d07d6ad7820bf63 (master)
 > git config core.sparsecheckout # timeout=10
 > git checkout -f d9ed61b32f86824fd57e33b28d07d6ad7820bf63 # timeout=10
Commit message: "include version in build email subject"
[Gitea] Notifying branch build status: PENDING Build started...
[Gitea] Notified
[Pipeline] Start of Pipeline
[Pipeline] node
Still waiting to schedule task
Waiting for next available executor
Running on Jenkins in /var/lib/jenkins/workspace/ackagesPython_python-h5py_master
[Pipeline] {
[Pipeline] timestamps
[Pipeline] {
[Pipeline] stage
[Pipeline] { (Prepare)
[Pipeline] catchError
[Pipeline] {
[Pipeline] checkout
[2022-03-21T08:57:02.265Z] The recommended git tool is: NONE
[2022-03-21T08:57:02.265Z] Warning: CredentialId "jenkins-gotea-token" could not be found.
[2022-03-21T08:57:02.266Z]  > git rev-parse --resolve-git-dir /var/lib/jenkins/workspace/ackagesPython_python-h5py_master/.git # timeout=10
[2022-03-21T08:57:02.270Z] Fetching changes from the remote Git repository
[2022-03-21T08:57:02.270Z]  > git config remote.origin.url https://[email protected]/packagesPython/python-h5py.git # timeout=10
[2022-03-21T08:57:02.274Z] Cleaning workspace
[2022-03-21T08:57:02.274Z]  > git rev-parse --verify HEAD # timeout=10
[2022-03-21T08:57:02.278Z] Resetting working tree
[2022-03-21T08:57:02.278Z]  > git reset --hard # timeout=10
[2022-03-21T08:57:02.281Z]  > git clean -fdx # timeout=10
[2022-03-21T08:57:02.285Z] Fetching without tags
[2022-03-21T08:57:02.285Z] Fetching upstream changes from https://[email protected]/packagesPython/python-h5py.git
[2022-03-21T08:57:02.285Z]  > git --version # timeout=10
[2022-03-21T08:57:02.288Z]  > git --version # 'git version 2.32.0'
[2022-03-21T08:57:02.288Z]  > git fetch --no-tags --force --progress -- https://[email protected]/packagesPython/python-h5py.git +refs/heads/master:refs/remotes/origin/master # timeout=10
[2022-03-21T08:57:02.464Z] Checking out Revision e8a7082bdc625d79bc41d5d45bfce2ba2ed1f370 (master)
[2022-03-21T08:57:02.464Z]  > git config core.sparsecheckout # timeout=10
[2022-03-21T08:57:02.468Z]  > git checkout -f e8a7082bdc625d79bc41d5d45bfce2ba2ed1f370 # timeout=10
[2022-03-21T08:57:02.473Z] Commit message: "[trunk] -> [community] 'python-h5py-3.6.0-3' add"
[2022-03-21T08:57:02.474Z]  > git rev-list --no-walk e8a7082bdc625d79bc41d5d45bfce2ba2ed1f370 # timeout=10
[2022-03-21T08:57:02.483Z] Cleaning workspace
[2022-03-21T08:57:02.483Z]  > git rev-parse --verify HEAD # timeout=10
[2022-03-21T08:57:02.487Z] Resetting working tree
[2022-03-21T08:57:02.487Z]  > git reset --hard # timeout=10
[2022-03-21T08:57:02.491Z]  > git clean -fdx # timeout=10
[2022-03-21T08:57:02.495Z] [Gitea] Notifying branch build status: PENDING Build started...
[2022-03-21T08:57:02.678Z] [Gitea] Notified
[Pipeline] libraryResource
[Pipeline] readYaml
[Pipeline] sh
[2022-03-21T08:57:02.940Z] + git show -s --format=%an e8a7082bdc625d79bc41d5d45bfce2ba2ed1f370
[Pipeline] sh
[2022-03-21T08:57:03.196Z] + git show -s --format=%ae e8a7082bdc625d79bc41d5d45bfce2ba2ed1f370
[Pipeline] sh
[2022-03-21T08:57:03.453Z] + git show --pretty=format: --name-status e8a7082bdc625d79bc41d5d45bfce2ba2ed1f370
[Pipeline] fileExists
[Pipeline] sh
[2022-03-21T08:57:03.729Z] + pkg2yaml -d x86_64/community
[Pipeline] readYaml
[Pipeline] }
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // stage
[Pipeline] stage
[Pipeline] { (Build)
[Pipeline] withCredentials
[2022-03-21T08:57:03.811Z] Masking supported pattern matches of $BUILDBOT_GPGP
[Pipeline] {
[Pipeline] dir
[2022-03-21T08:57:03.840Z] Running in /var/lib/jenkins/workspace/ackagesPython_python-h5py_master/x86_64/community
[Pipeline] {
[Pipeline] catchError
[Pipeline] {
[Pipeline] sh
[2022-03-21T08:57:04.108Z] + buildpkg -C -d galaxy
[2022-03-21T08:57:06.590Z] :: Synchronizing package databases...
[2022-03-21T08:57:06.590Z]  system downloading...
[2022-03-21T08:57:06.590Z]  world downloading...
[2022-03-21T08:57:06.590Z]  galaxy downloading...
[2022-03-21T08:57:06.590Z] :: Starting full system upgrade...
[2022-03-21T08:57:06.590Z]  there is nothing to do
[2022-03-21T08:57:08.451Z] ==> Building in chroot for [default] (x86_64)...
[2022-03-21T08:57:08.702Z] ==> Synchronizing chroot copy [/build/buildpkg/default-x86_64/root] -> [jenkins]...done
[2022-03-21T08:57:09.252Z] ==> Making package: python-h5py 3.6.0-3 (Mon Mar 21 09:57:09 2022)
[2022-03-21T08:57:09.252Z] ==> Retrieving sources...
[2022-03-21T08:57:09.252Z]   -> Found h5py-3.6.0.tar.gz
[2022-03-21T08:57:09.252Z] ==> Validating source files with sha256sums...
[2022-03-21T08:57:09.252Z]     h5py-3.6.0.tar.gz ... Passed
[2022-03-21T08:57:13.374Z] ==> Making package: python-h5py 3.6.0-3 (Mon 21 Mar 2022 08:57:12 AM UTC)
[2022-03-21T08:57:13.374Z] ==> Checking runtime dependencies...
[2022-03-21T08:57:13.374Z] ==> Installing missing dependencies...
[2022-03-21T08:57:13.374Z] error: target not found: liblzf
[2022-03-21T08:57:13.374Z] ==> ERROR: 'pacman' failed to install missing dependencies.
[2022-03-21T08:57:13.374Z] ==> Missing dependencies:
[2022-03-21T08:57:13.374Z]   -> hdf5
[2022-03-21T08:57:13.374Z]   -> liblzf
[2022-03-21T08:57:13.374Z]   -> python-numpy
[2022-03-21T08:57:13.374Z] ==> Checking buildtime dependencies...
[2022-03-21T08:57:13.374Z] ==> Installing missing dependencies...
[2022-03-21T08:57:13.374Z] resolving dependencies...
[2022-03-21T08:57:13.374Z] looking for conflicting packages...
[2022-03-21T08:57:13.374Z] 
[2022-03-21T08:57:13.374Z] Package (30)                  New Version  Net Change  Download Size
[2022-03-21T08:57:13.374Z] 
[2022-03-21T08:57:13.374Z] world/blas                    3.10.0-1       0.33 MiB               
[2022-03-21T08:57:13.374Z] galaxy/blosc                  1.21.1-2       0.09 MiB               
[2022-03-21T08:57:13.374Z] world/cblas                   3.10.0-1       0.20 MiB               
[2022-03-21T08:57:13.374Z] galaxy/hdf5                   1.12.1-1      12.59 MiB               
[2022-03-21T08:57:13.374Z] world/lapack                  3.10.0-1       7.18 MiB               
[2022-03-21T08:57:13.374Z] galaxy/libaec                 1.0.6-1        0.13 MiB               
[2022-03-21T08:57:13.374Z] system/libnsl                 2.0.0-2        0.07 MiB               
[2022-03-21T08:57:13.374Z] system/lzo                    2.10-3.1       0.38 MiB               
[2022-03-21T08:57:13.374Z] system/python                 3.10.2-1      53.85 MiB               
[2022-03-21T08:57:13.374Z] galaxy/python-apipkg          2.1.0-1        0.03 MiB               
[2022-03-21T08:57:13.374Z] world/python-appdirs          1.4.4-6        0.07 MiB               
[2022-03-21T08:57:13.374Z] world/python-attrs            21.4.0-1       0.45 MiB               
[2022-03-21T08:57:13.374Z] galaxy/python-iniconfig       1.1.1-5.1      0.02 MiB               
[2022-03-21T08:57:13.374Z] galaxy/python-more-itertools  8.12.0-1       0.48 MiB               
[2022-03-21T08:57:13.374Z] galaxy/python-numexpr         2.8.1-1        0.49 MiB               
[2022-03-21T08:57:13.374Z] world/python-numpy            1.22.3-1      33.33 MiB               
[2022-03-21T08:57:13.374Z] world/python-ordered-set      4.0.2-6        0.06 MiB               
[2022-03-21T08:57:13.374Z] world/python-packaging        20.9-7         0.18 MiB               
[2022-03-21T08:57:13.374Z] galaxy/python-pluggy          1.0.0-1        0.10 MiB               
[2022-03-21T08:57:13.374Z] galaxy/python-py              1.11.0-1.1     0.71 MiB               
[2022-03-21T08:57:13.374Z] world/python-pyparsing        3.0.3-1        0.94 MiB               
[2022-03-21T08:57:13.374Z] world/python-six              1.16.0-5       0.09 MiB               
[2022-03-21T08:57:13.374Z] world/python-tomli            2.0.1-1        0.08 MiB               
[2022-03-21T08:57:13.374Z] world/snappy                  1.1.9-2        0.08 MiB               
[2022-03-21T08:57:13.374Z] galaxy/cython                 0.29.28-1      8.07 MiB               
[2022-03-21T08:57:13.375Z] galaxy/python-pkgconfig       1.5.5-3        0.03 MiB               
[2022-03-21T08:57:13.375Z] galaxy/python-pytables        3.7.0-2       14.80 MiB       1.53 MiB
[2022-03-21T08:57:13.375Z] galaxy/python-pytest          7.1.1-1        2.62 MiB               
[2022-03-21T08:57:13.375Z] galaxy/python-pytest-mpi      0.6-1.1        0.03 MiB       0.01 MiB
[2022-03-21T08:57:13.375Z] world/python-setuptools       1:59.4.0-1     2.96 MiB               
[2022-03-21T08:57:13.375Z] 
[2022-03-21T08:57:13.375Z] Total Download Size:     1.54 MiB
[2022-03-21T08:57:13.375Z] Total Installed Size:  140.45 MiB
[2022-03-21T08:57:13.375Z] 
[2022-03-21T08:57:13.375Z] :: Proceed with installation? [Y/n] 
[2022-03-21T08:57:13.375Z] :: Retrieving packages...
[2022-03-21T08:57:13.375Z]  python-pytables-3.7.0-2-x86_64 downloading...
[2022-03-21T08:57:13.375Z]  python-pytest-mpi-0.6-1.1-any downloading...
[2022-03-21T08:57:13.375Z] checking keyring...
[2022-03-21T08:57:13.375Z] checking package integrity...
[2022-03-21T08:57:13.925Z] loading package files...
[2022-03-21T08:57:13.925Z] checking for file conflicts...
[2022-03-21T08:57:13.925Z] :: Processing package changes...
[2022-03-21T08:57:13.925Z] installing libnsl...
[2022-03-21T08:57:13.925Z] installing python...
[2022-03-21T08:57:14.476Z] Optional dependencies for python
[2022-03-21T08:57:14.476Z]     python-setuptools [pending]
[2022-03-21T08:57:14.476Z]     python-pip
[2022-03-21T08:57:14.476Z]     sqlite [installed]
[2022-03-21T08:57:14.476Z]     mpdecimal: for decimal
[2022-03-21T08:57:14.476Z]     xz: for lzma [installed]
[2022-03-21T08:57:14.476Z]     tk: for tkinter
[2022-03-21T08:57:14.476Z] installing cython...
[2022-03-21T08:57:14.476Z] installing python-pkgconfig...
[2022-03-21T08:57:14.476Z] installing python-appdirs...
[2022-03-21T08:57:14.476Z] installing python-more-itertools...
[2022-03-21T08:57:14.476Z] installing python-ordered-set...
[2022-03-21T08:57:14.476Z] installing python-pyparsing...
[2022-03-21T08:57:14.476Z] Optional dependencies for python-pyparsing
[2022-03-21T08:57:14.476Z]     python-railroad-diagrams: for generating Railroad Diagrams
[2022-03-21T08:57:14.476Z]     python-jinja: for generating Railroad Diagrams
[2022-03-21T08:57:14.476Z] installing python-six...
[2022-03-21T08:57:14.476Z] installing python-packaging...
[2022-03-21T08:57:14.476Z] installing python-setuptools...
[2022-03-21T08:57:14.476Z] installing python-attrs...
[2022-03-21T08:57:14.476Z] installing python-iniconfig...
[2022-03-21T08:57:14.476Z] installing python-pluggy...
[2022-03-21T08:57:14.476Z] installing python-apipkg...
[2022-03-21T08:57:14.476Z] installing python-py...
[2022-03-21T08:57:14.476Z] installing python-tomli...
[2022-03-21T08:57:14.476Z] installing python-pytest...
[2022-03-21T08:57:14.476Z] installing python-pytest-mpi...
[2022-03-21T08:57:14.476Z] installing snappy...
[2022-03-21T08:57:14.476Z] installing blosc...
[2022-03-21T08:57:14.476Z] installing lzo...
[2022-03-21T08:57:14.476Z] installing libaec...
[2022-03-21T08:57:14.476Z] installing hdf5...
[2022-03-21T08:57:14.476Z] installing blas...
[2022-03-21T08:57:14.476Z] installing cblas...
[2022-03-21T08:57:14.476Z] installing lapack...
[2022-03-21T08:57:14.476Z] installing python-numpy...
[2022-03-21T08:57:14.726Z] Optional dependencies for python-numpy
[2022-03-21T08:57:14.727Z]     openblas: faster linear algebra
[2022-03-21T08:57:14.727Z] installing python-numexpr...
[2022-03-21T08:57:14.727Z] installing python-pytables...
[2022-03-21T08:57:14.727Z] ==> ERROR: Could not resolve all dependencies.
[2022-03-21T08:57:16.588Z] ==> ERROR: Build failed, check /build/buildpkg/default-x86_64/jenkins/build
[Pipeline] }
[2022-03-21T08:57:16.591Z] ERROR: Failed to build source
[2022-03-21T08:57:16.591Z] ERROR: script returned exit code 255
[Pipeline] // catchError
[Pipeline] }
[Pipeline] // dir
Post stage
[Pipeline] emailext
[2022-03-21T08:57:16.659Z] Sending email to: artix-build-failures at artixlinux.org


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